PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.G28UT
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 200aa    MW: 22799.6 Da    PI: 8.7627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.G28UTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001877100123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  +kC++C+ksF++   L +H  + H
  Aradu.G28UT  77 WKCGYCKKSFRDEKFLDQHFDNrH 100
                  58**************99976666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183596.28E-556102IPR026939At2g23090-like
PROSITE profilePS501578.87177102IPR007087Zinc finger, C2H2
PROSITE patternPS00028079100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MNKAIDFASI FLLFXXXLLF VFLHPVHPYI RTRDMQMKEF SNRNKSMSMK CIALEKGAGQ  60
LGKDQEEHKI CLGFHDWKCG YCKKSFRDEK FLDQHFDNRH SNLLNLSDGK CLADLCGALH  120
CDAVMNRKFS RSKCNPAAAT RNKHLCESLA ESCFPVSDGP SASRLHGTKK YLRCGFWSID  180
LGATSFVLSF PLSGTKRYEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187605.12e-72PREDICTED: uncharacterized protein LOC107629345
TrEMBLA0A0B2QWV51e-54A0A0B2QWV5_GLYSO; Uncharacterized protein
TrEMBLI1LW131e-54I1LW13_SOYBN; Uncharacterized protein
STRINGGLYMA13G02180.14e-54(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.15e-50C2H2-like zinc finger protein